Transcript: ENST00000445055.2 SLC6A13-201

Description

solute carrier family 6 (neurotransmitter transporter), member 13 [Source:HGNC Symbol;Acc:11046]

Gene Synonyms

GAT-2, GAT2, GAT3

Location

Chromosome 12: 329,789-372,039 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 22 domains and features, is associated with 18790 variant alleles and maps to 474 oligo probes.

Gene

This transcript is a product of gene ENSG00000010379.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000343164.4	SLC6A13-001	2185	602aa	ENSP00000339260.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8502	Q9NSD5	NM_016615.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445055.2	SLC6A13-201	1948	510aa	ENSP00000407104.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53729	F5GZA5 Q9NSD5	NM_001190997.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436453.1	SLC6A13-002	1101	97aa	ENSP00000389316.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58198	Q9NSD5	NM_001243392.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546319.1	SLC6A13-004	541	150aa	ENSP00000444606.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539260.1	SLC6A13-005	607	123aa	ENSP00000437386.1	Nonsense mediated decay		F5H6S9	-	-
ENST00000542272.1	SLC6A13-007	560	69aa	ENSP00000443466.1	Nonsense mediated decay		F5H5D9	-	-
ENST00000539668.1	SLC6A13-012	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542379.1	SLC6A13-015	340	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000536842.1	SLC6A13-008	1001	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534887.1	SLC6A13-009	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000543722.1	SLC6A13-011	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542947.1	SLC6A13-010	490	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,948 bps, Translation length: 510 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NSD5

CCDS

This transcript is a member of the Human CCDS set: CCDS53729

Version

ENST00000445055.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000445055.2 SLC6A13-201

Summary