Transcript: ENST00000341776.2 JARID2-001

Description

jumonji, AT rich interactive domain 2 [Source:HGNC Symbol;Acc:6196]

Gene Synonyms

JMJ

Location

About this transcript

This transcript has 18 exons, is annotated with 22 domains and features, is associated with 141429 variant alleles and maps to 749 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341776.2	JARID2-001	5755	1246aa	ENSP00000341280.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4533	Q92833 Q96PA1	NM_004973.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397311.3	JARID2-201	3864	1074aa	ENSP00000380478.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58996	Q92833 Q96PA1	NM_001267040.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541660.1	JARID2-202	3216	960aa	ENSP00000444623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H590	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474854.1	JARID2-002	520	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 5,755 bps, Translation length: 1,246 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92833

CCDS

This transcript is a member of the Human CCDS set: CCDS4533

Version

ENST00000341776.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000039926 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.