Transcript: ENST00000262803.5 UPF1-001

Description

UPF1 regulator of nonsense transcripts homolog (yeast) [Source:HGNC Symbol;Acc:9962]

Gene Synonyms

HUPF1, KIAA0221, NORF1, RENT1, pNORF1, smg-2

Location

Chromosome 19: 18,942,747-18,979,045 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 14 domains and features, is associated with 18130 variant alleles and maps to 770 oligo probes.

Gene

This transcript is a product of gene ENSG00000005007.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262803.5	UPF1-001	5348	1118aa	ENSP00000262803.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12386	B3KY55 Q92900	NM_002911.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599848.1	UPF1-002	5311	1129aa	ENSP00000470142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KY55 Q92900	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000600310.1	UPF1-007	750	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000598471.1	UPF1-008	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600868.1	UPF1-004	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000594504.1	UPF1-003	559	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000601981.1	UPF1-011	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000598209.1	UPF1-006	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600012.1	UPF1-005	501	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000596842.1	UPF1-012	3825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000600689.1	UPF1-013	3084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594243.1	UPF1-009	683	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000601689.1	UPF1-010	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 5,348 bps, Translation length: 1,118 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92900

CCDS

This transcript is a member of the Human CCDS set: CCDS12386

Version

ENST00000262803.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000464683 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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All species

Recent locations

Transcript: ENST00000262803.5 UPF1-001

Summary