Transcript: ENST00000264276.6 ALS2-001

Description

amyotrophic lateral sclerosis 2 (juvenile) [Source:HGNC Symbol;Acc:443]

Gene Synonyms

ALS2CR6, ALSJ, IAHSP, KIAA1563, PLSJ

Location

Chromosome 2: 202,565,277-202,645,912 reverse strand.

About this transcript

This transcript has 34 exons, is annotated with 53 domains and features, is associated with 33579 variant alleles and maps to 1014 oligo probes.

Gene

This transcript is a product of gene ENSG00000003393.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264276.6	ALS2-001	6644	1657aa	ENSP00000264276.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42800	A8K4R4 J3KQ33 J3KQ43 Q96Q42	NM_020919.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457679.2	ALS2-201	3242	576aa	ENSP00000394823.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KPJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467448.1	ALS2-002	2674	396aa	ENSP00000429223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46492	J3KQ33 J3KQ43 Q96Q42	NM_001135745.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409632.2	ALS2-009	571	139aa	ENSP00000386384.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQ33 J3KQ43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000410052.1	ALS2-006	559	106aa	ENSP00000386948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KQ43	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000439495.1	ALS2-005	3242	585aa	ENSP00000403832.1	Nonsense mediated decay		B3KPJ0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496244.1	ALS2-007	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489440.1	ALS2-012	727	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494017.1	ALS2-011	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483703.1	ALS2-010	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462747.1	ALS2-008	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482891.1	ALS2-004	4895	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482789.1	ALS2-003	2981	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 34, Coding exons: 33, Transcript length: 6,644 bps, Translation length: 1,657 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96Q42

CCDS

This transcript is a member of the Human CCDS set: CCDS42800

Version

ENST00000264276.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000335562 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000264276.6 ALS2-001

Summary