Transcript: ENST00000540549.1 TET2-202

Description

tet methylcytosine dioxygenase 2 [Source:HGNC Symbol;Acc:25941]

Gene Synonyms

FLJ20032, KIAA1546, MDS

Location

Chromosome 4: 106,067,450-106,200,973 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 13 domains and features, is associated with 62712 variant alleles and maps to 595 oligo probes.

Gene

This transcript is a product of gene ENSG00000168769.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000540549.1	TET2-202	10166	2002aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47120	D6RE87 E7EPB1 Q6N021	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000513237.1	TET2-003	10166	2023aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE87 E7EPB1 E7EQS8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545826.1	TET2-203	10075	1194aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE87 Q6N021	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000380013.4	TET2-002	9679	2002aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47120	D6RE87 E7EPB1 Q6N021	NM_001127208.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000305737.2	TET2-001	9233	1165aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3666	D6RE87 Q6N021	NM_017628.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394764.1	TET2-201	9215	1165aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3666	D6RE87 Q6N021	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000413648.2	TET2-004	4973	1167aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE87 E7EPB1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000514870.1	TET2-006	865	110aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE87	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000265149.5	TET2-005	9588	1194aa	Nonsense mediated decay		D6RE87 Q6N021	-	-
ENST00000504042.1	TET2-007	455	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505801.1	TET2-008	391	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Loading component

Statistics

Exons: 11, Coding exons: 9, Transcript length: 10,166 bps, Translation length: 2,002 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6N021

CCDS

This transcript is a member of the Human CCDS set: CCDS47120

Version

ENST00000540549.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000253952 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000540549.1 TET2-202

Summary