Transcript: ENST00000406403.1 CNOT3-003

Description

CCR4-NOT transcription complex, subunit 3 [Source:HGNC Symbol;Acc:7879]

Gene Synonyms

KIAA0691, LENG2, NOT3, NOT3H

Location

Chromosome 19: 54,645,112-54,659,418 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 18 domains and features, is associated with 8001 variant alleles and maps to 595 oligo probes.

Gene

This transcript is a product of gene ENSG00000088038.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406403.1	CNOT3-003	4138	753aa	ENSP00000383954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12880	O75175	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000221232.5	CNOT3-001	2852	753aa	ENSP00000221232.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12880	O75175	NM_014516.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000358389.3	CNOT3-201	2570	571aa	ENSP00000351159.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75175	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000457463.1	CNOT3-006	1269	288aa	ENSP00000401703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000440571.1	CNOT3-009	1125	375aa	ENSP00000398463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000471126.1	CNOT3-011	541	88aa	ENSP00000420064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5J4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000447684.1	CNOT3-005	2778	106aa	ENSP00000411587.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496327.1	CNOT3-010	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482247.1	CNOT3-002	4517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489953.1	CNOT3-007	2048	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,138 bps, Translation length: 753 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75175

CCDS

This transcript is a member of the Human CCDS set: CCDS12880

Version

ENST00000406403.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000142130 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000406403.1 CNOT3-003

Summary