Transcript: ENST00000393331.3 SPOP-202

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Description

speckle-type POZ protein [Source:HGNC Symbol;Acc:11254]

Gene Synonyms

BTBD32, TEF2

Location

Chromosome 17: 47,676,248-47,755,525 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 13 domains and features, is associated with 32737 variant alleles and maps to 679 oligo probes.

Gene

This transcript is a product of gene ENSG00000121067.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393331.3	SPOP-202	3088	374aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11551	B4DEE4 B4DUE7 D6RA79 D6RBH6 D6RD94 D6RDG8 D6RDV6 D6RFL7 D6RGZ4 D6RIS7 O43791	NM_001007227.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000393328.2	SPOP-001	2985	374aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11551	B4DEE4 B4DUE7 D6RA79 D6RBH6 D6RD94 D6RDG8 D6RDV6 D6RFL7 D6RGZ4 D6RIS7 O43791	NM_003563.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000347630.2	SPOP-201	2965	374aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11551	B4DEE4 B4DUE7 D6RA79 D6RBH6 D6RD94 D6RDG8 D6RDV6 D6RFL7 D6RGZ4 D6RIS7 O43791	NM_001007230.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000503676.1	SPOP-007	1932	374aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11551	B4DEE4 B4DUE7 D6RA79 D6RBH6 D6RD94 D6RDG8 D6RDV6 D6RFL7 D6RGZ4 D6RIS7 O43791	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504102.1	SPOP-005	1865	374aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11551	B4DEE4 B4DUE7 D6RA79 D6RBH6 D6RD94 D6RDG8 D6RDV6 D6RFL7 D6RGZ4 D6RIS7 O43791	NM_001007228.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509079.1	SPOP-012	1134	262aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RBH6 D6RD94 D6RDG8 D6RDV6 D6RFL7 D6RGZ4 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505581.1	SPOP-011	984	238aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RBH6 D6RD94 D6RDG8 D6RFL7 D6RGZ4 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507970.1	SPOP-013	919	185aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RBH6 D6RD94 D6RFL7 D6RGZ4 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514121.1	SPOP-009	873	138aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RBH6 D6RD94 D6RFL7 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510476.1	SPOP-008	773	66aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RD94 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000515508.2	SPOP-020	563	117aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RD94 D6RFL7 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451526.2	SPOP-017	450	32aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508805.1	SPOP-010	428	40aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA79 D6RIS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506399.1	SPOP-015	918	44aa	Nonsense mediated decay		D6RBR3	-	-
ENST00000509869.1	SPOP-022	779	72aa	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000504212.1	SPOP-019	534	44aa	Nonsense mediated decay		D6RBR3	-	-
ENST00000513080.1	SPOP-016	575	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502385.1	SPOP-018	574	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572686.1	SPOP-025	2135	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507551.1	SPOP-024	932	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509765.1	SPOP-014	613	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577134.1	SPOP-026	421	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504889.1	SPOP-023	400	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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Statistics

Exons: 12, Coding exons: 9, Transcript length: 3,088 bps, Translation length: 374 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43791

CCDS

This transcript is a member of the Human CCDS set: CCDS11551

Version

ENST00000393331.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000393331.3 SPOP-202

Summary