Transcript: ENST00000389048.3 ALK-001

Description

anaplastic lymphoma receptor tyrosine kinase [Source:HGNC Symbol;Acc:427]

Gene Synonyms

CD246, NBLST3

Location

About this transcript

This transcript has 29 exons, is annotated with 38 domains and features, is associated with 342605 variant alleles and maps to 973 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389048.3	ALK-001	6220	1620aa	ENSP00000373700.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33172	Q580I3 Q9UM73	NM_004304.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431873.1	ALK-201	1353	450aa	ENSP00000414027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EPW7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000453137.1	ALK-002	577	152aa	ENSP00000387488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZ33	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000498037.1	ALK-003	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 6,220 bps, Translation length: 1,620 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UM73

CCDS

This transcript is a member of the Human CCDS set: CCDS33172

Version

ENST00000389048.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000324994 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.