Transcript: ENST00000342988.3 SMAD4-201

Description

SMAD family member 4 [Source:HGNC Symbol;Acc:6770]

Gene Synonyms

DPC4, JIP, MADH4, MYHRS

Location

Chromosome 18: 48,556,583-48,611,409 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 16 domains and features, is associated with 31234 variant alleles and maps to 834 oligo probes.

Gene

This transcript is a product of gene ENSG00000141646.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342988.3	SMAD4-201	8769	552aa	ENSP00000341551.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11950	K7EIJ2 K7EL15 K7EL18 K7ENG1 K7ENG8 Q13485 Q9BYG6	NM_005359.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000398417.2	SMAD4-001	8495	552aa	ENSP00000381452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11950	K7EIJ2 K7EL15 K7EL18 K7ENG1 K7ENG8 Q13485 Q9BYG6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588745.1	SMAD4-004	1371	456aa	ENSP00000464901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIJ2 K7EIU8 K7EL15 K7EL18 K7ENG1 K7ENG8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000452201.2	SMAD4-202	1207	177aa	ENSP00000409551.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIJ2 K7EL15 K7EL18 K7ENG1 K7ENG8 L7N2F7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591914.1	SMAD4-008	992	151aa	ENSP00000466941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIJ2 K7EL15 K7EL18 K7ENG1 K7ENG8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588860.1	SMAD4-016	779	126aa	ENSP00000465878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL15 K7EL18 K7ENG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589941.1	SMAD4-010	582	120aa	ENSP00000465874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL15 K7ENG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589076.1	SMAD4-006	576	90aa	ENSP00000466934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000593223.1	SMAD4-013	568	82aa	ENSP00000466118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ELK2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590061.1	SMAD4-007	544	140aa	ENSP00000464772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIJ2 K7EL15 K7EL18 K7ENG1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592186.1	SMAD4-005	1306	320aa	ENSP00000468611.1	Nonsense mediated decay		K7EIJ2 K7EL15 K7EL18 K7ENG1 K7ENG8 K7ES96	-	-
ENST00000586253.1	SMAD4-014	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000592911.1	SMAD4-009	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591126.1	SMAD4-002	4970	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589706.1	SMAD4-011	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590499.1	SMAD4-012	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585448.1	SMAD4-015	459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 8,769 bps, Translation length: 552 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13485

CCDS

This transcript is a member of the Human CCDS set: CCDS11950

Version

ENST00000342988.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000255993 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000342988.3 SMAD4-201

Summary