Transcript: ENST00000297338.2 RAD21-001

Description

RAD21 homolog (S. pombe) [Source:HGNC Symbol;Acc:9811]

Gene Synonyms

CDLS4, HR21, HRAD21, KIAA0078, MCD1, NXP1, SCC1, hHR21

Location

Chromosome 8: 117,858,174-117,887,105 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 11 domains and features, is associated with 14420 variant alleles and maps to 608 oligo probes.

Gene

This transcript is a product of gene ENSG00000164754.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297338.2	RAD21-001	3749	631aa	ENSP00000297338.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6321	E5RFV8 E5RFZ5 E5RG18 E5RI01 E5RIN7 E5RJK5 E5RJW1 O60216	NM_006265.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000523986.1	RAD21-003	2506	135aa	ENSP00000428513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RG18 E5RI01	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000517749.1	RAD21-009	1003	69aa	ENSP00000430273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RG18	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000518055.1	RAD21-010	896	176aa	ENSP00000428003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFZ5 E5RG18 E5RI01	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000517485.1	RAD21-005	874	225aa	ENSP00000427923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFV8 E5RJK5 E5RJW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520992.1	RAD21-006	831	228aa	ENSP00000429342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFV8 E5RIN7 E5RJK5 E5RJW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522699.1	RAD21-004	548	120aa	ENSP00000428158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519837.1	RAD21-011	515	124aa	ENSP00000430524.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJK5 E5RJW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523547.1	RAD21-007	908	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519469.1	RAD21-008	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 3,749 bps, Translation length: 631 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60216

CCDS

This transcript is a member of the Human CCDS set: CCDS6321

Version

ENST00000297338.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000381184 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000297338.2 RAD21-001

Summary