Transcript: ENST00000284049.3 CHD1-001

Description

chromodomain helicase DNA binding protein 1 [Source:HGNC Symbol;Acc:1915]

Location

Chromosome 5: 98,191,449-98,262,240 reverse strand.

About this transcript

This transcript has 35 exons, is annotated with 40 domains and features, is associated with 32333 variant alleles and maps to 1130 oligo probes.

Gene

This transcript is a product of gene ENSG00000153922.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284049.3	CHD1-001	5918	1710aa	ENSP00000284049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34204	O14646	NM_001270.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512844.1	CHD1-005	848	22aa	ENSP00000422589.1	Nonsense mediated decay		H0Y8Z0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505657.1	CHD1-006	736	113aa	ENSP00000422225.1	Nonsense mediated decay		H0Y8V4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511067.1	CHD1-008	817	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514344.1	CHD1-002	2955	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512392.1	CHD1-003	1968	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513064.1	CHD1-007	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505982.1	CHD1-011	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508756.1	CHD1-009	724	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511628.1	CHD1-004	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000414220.2	CHD1-010	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 35, Transcript length: 5,918 bps, Translation length: 1,710 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14646

CCDS

This transcript is a member of the Human CCDS set: CCDS34204

Version

ENST00000284049.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000370295 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000284049.3 CHD1-001

Summary