Transcript: ENST00000269571.5 ERBB2-008

Description

v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 [Source:HGNC Symbol;Acc:3430]

Gene Synonyms

CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN19, NEU, NGL, TKR1

Location

Chromosome 17: 37,856,333-37,884,915 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 44 domains and features, is associated with 25624 variant alleles and maps to 906 oligo probes.

Gene

This transcript is a product of gene ENSG00000141736.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000269571.5	ERBB2-008	4545	1255aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32642	F5H1T4 J3KS21 J3QLV2 P04626 Q9NP09	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000406381.2	ERBB2-201	4806	1225aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45667	F5H1T4 J3KS21 J3QLV2 Q9NP09	NM_001005862.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000584601.1	ERBB2-001	4792	1225aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45667	F5H1T4 J3KS21 J3QLV2 Q9NP09	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540147.1	ERBB2-203	4624	1225aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45667	F5H1T4 J3KS21 J3QLV2 Q9NP09	NM_004448.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000541774.1	ERBB2-204	4341	1240aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1T4 J3KS21 J3QLV2 P04626 Q9NP09	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000584450.1	ERBB2-005	3730	1055aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1T4 J3KS21 J3QLU9 J3QLV2 Q9NP09	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000445658.2	ERBB2-004	3238	979aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTR1 Q9NP09	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000578199.1	ERBB2-003	2526	603aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1T4 J3KS21 J3QLV2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540042.1	ERBB2-202	2147	603aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1T4 J3KS21 J3QLV2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000580074.1	ERBB2-018	754	251aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NP09	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000584099.1	ERBB2-013	583	139aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS21 J3QLV2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578709.1	ERBB2-012	559	102aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLV2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582818.1	ERBB2-019	529	177aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NP09	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000578502.1	ERBB2-015	497	166aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000578373.1	ERBB2-007	4523	90aa	Nonsense mediated decay		J3QL83	-	-
ENST00000582648.1	ERBB2-011	1013	96aa	Nonsense mediated decay		J3KRI9	-	-
ENST00000584888.1	ERBB2-020	500	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583038.1	ERBB2-010	4930	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582788.1	ERBB2-006	2004	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584908.1	ERBB2-009	1316	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000578630.1	ERBB2-016	874	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584014.1	ERBB2-002	849	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584684.1	ERBB2-017	649	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583391.1	ERBB2-014	465	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Loading component

Statistics

Exons: 27, Coding exons: 27, Transcript length: 4,545 bps, Translation length: 1,255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P04626

CCDS

This transcript is a member of the Human CCDS set: CCDS32642

Version

ENST00000269571.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000445621 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000269571.5 ERBB2-008

Summary