Transcript: ENST00000257290.5 PDGFRA-001

Description

platelet-derived growth factor receptor, alpha polypeptide [Source:HGNC Symbol;Acc:8803]

Gene Synonyms

CD140A, CD140a, PDGFR-2, PDGFR2, RHEPDGFRA

Location

Chromosome 4: 55,095,264-55,164,414 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 48 domains and features, is associated with 38428 variant alleles and maps to 804 oligo probes.

Gene

This transcript is a product of gene ENSG00000134853.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257290.5	PDGFRA-001	6576	1089aa	ENSP00000257290.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3495	D6RDX0 D6RG11 D6RIG5 P16234	NM_006206.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000508170.1	PDGFRA-002	2202	218aa	ENSP00000425648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDX0 D6RG11 D6RIG5 P16234	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504461.1	PDGFRA-006	771	158aa	ENSP00000426472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDX0 D6RG11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503856.1	PDGFRA-007	586	159aa	ENSP00000425902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDX0 D6RG11 D6RIG5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512143.1	PDGFRA-009	580	147aa	ENSP00000425626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RJH0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512522.1	PDGFRA-010	573	154aa	ENSP00000425232.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDX0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509490.1	PDGFRA-008	2991	743aa	ENSP00000424218.1	Nonsense mediated decay		D6RDX0 D6RG11 D6RIG5 P16234	-	-
ENST00000509092.1	PDGFRA-003	2417	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000507536.1	PDGFRA-004	1146	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461294.2	PDGFRA-005	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 22, Transcript length: 6,576 bps, Translation length: 1,089 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P16234

CCDS

This transcript is a member of the Human CCDS set: CCDS3495

Version

ENST00000257290.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250598 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000257290.5 PDGFRA-001

Summary