Transcript: ENST00000256474.2 VHL-001

Description

von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:12687]

Gene Synonyms

HRCA1, RCA1, VHL1, pVHL

Location

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 10284 variant alleles and maps to 573 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256474.2	VHL-001	3737	213aa	ENSP00000256474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2597	A0PJF6 J9Z661 P40337	NM_000551.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000345392.2	VHL-002	2696	172aa	ENSP00000344757.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2598	A0PJF6 J9Z661 P40337	NM_198156.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000477538.1	VHL-003	958	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 3,737 bps, Translation length: 213 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P40337

CCDS

This transcript is a member of the Human CCDS set: CCDS2597

Version

ENST00000256474.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250559 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.