Transcript: ENST00000599338.2 SMC1A-005

Description

structural maintenance of chromosomes 1A [Source:HGNC Symbol;Acc:11111]

Gene Synonyms

CDLS2, DXS423E, KIAA0178, SB1.8, SMC1, SMC1L1, SMC1alpha, SMCB, Smcb

Location

Chromosome HG1433_PATCH: 53,123,620-53,139,378 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 4903 variant alleles and maps to 159 oligo probes.

Gene

This transcript is a product of gene ENSG00000269384.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000594240.1	SMC1A-001	9784	1233aa	ENSP00000471583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q14683	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000599303.1	SMC1A-202	1761	516aa	ENSP00000471963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G8JLG1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594131.1	SMC1A-003	868	262aa	ENSP00000469604.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y7K8 Q5H934	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000599338.2	SMC1A-005	838	279aa	ENSP00000477225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000595619.1	SMC1A-002	880	54aa	ENSP00000476457.1	Nonsense mediated decay	-	-	-
ENST00000595542.1	SMC1A-004	847	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 838 bps, Translation length: 279 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000599338.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project, projected to the alternate locus via a mapping from the primary assembly.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000056760 (version 2)

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Transcript: ENST00000599338.2 SMC1A-005

Summary