Transcript: ENST00000593590.1 MECP2-005

Description

methyl CpG binding protein 2 (Rett syndrome) [Source:HGNC Symbol;Acc:6990]

Gene Synonyms

AUTSX3, MRX16, MRX79, MRXS13, MRXSL, PPMX, RS, RTS, RTT

Location

Chromosome HG1497_PATCH: 153,199,481-153,266,159 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 21778 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000268563.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000598049.1	MECP2-002	1685	498aa	ENSP00000472559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P51608	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601699.1	MECP2-001	10505	486aa	ENSP00000470011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JH89 D3YJ43 P51608	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593590.1	MECP2-005	892	172aa	ENSP00000471217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5MCB4 C9JH89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000601709.1	MECP2-008	414	50aa	ENSP00000469487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JH89	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000594113.1	MECP2-003	784	34aa	ENSP00000472083.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000598211.1	MECP2-012	1299	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000600915.2	MECP2-010	1200	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000595642.1	MECP2-011	1089	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000599886.1	MECP2-004	875	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000597080.1	MECP2-013	436	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000595070.1	MECP2-006	351	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 892 bps, Translation length: 172 residues

Version

ENST00000593590.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project, projected to the alternate locus via a mapping from the primary assembly.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000129558 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000593590.1 MECP2-005

Summary