Transcript: ENST00000589878.1 LSM14A-006

Description

LSM14A, SCD6 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24489]

Gene Synonyms

C19orf13, DKFZP434D1335, FAM61A, RAP55, RAP55A

Location

Chromosome 19: 34,663,409-34,687,571 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 10677 variant alleles and maps to 100 oligo probes.

Gene

This transcript is a product of gene ENSG00000257103.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000544216.3	LSM14A-001	3596	463aa	ENSP00000446271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12435	Q8ND56	NM_015578.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433627.5	LSM14A-003	3424	463aa	ENSP00000413964.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46040	Q8ND56	NM_001114093.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540746.2	LSM14A-002	2152	422aa	ENSP00000446451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586157.1	LSM14A-004	1001	333aa	ENSP00000466725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EMZ9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589878.1	LSM14A-006	559	102aa	ENSP00000468130.1	Nonsense mediated decay		I3L4Q1	-	-
ENST00000588582.2	LSM14A-005	3601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590416.1	LSM14A-008	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585887.2	LSM14A-009	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 559 bps, Translation length: 102 residues

Version

ENST00000589878.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451574 (version 1)

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Transcript: ENST00000589878.1 LSM14A-006

Summary