Transcript: ENST00000465301.2 RGAG1-001

Description

retrotransposon gag domain containing 1 [Source:HGNC Symbol;Acc:29245]

Gene Synonyms

KIAA1318, MAR9, MART9, Mar9, Mart9

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 11401 variant alleles and maps to 336 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000465301.2	RGAG1-001	5426	1388aa	ENSP00000419786.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14552	E5RKA1 Q8NET4	NM_020769.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540313.1	RGAG1-201	5225	1388aa	ENSP00000441452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14552	E5RKA1 Q8NET4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520821.1	RGAG1-003	532	88aa	ENSP00000430395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RKA1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 5,426 bps, Translation length: 1,388 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NET4

CCDS

This transcript is a member of the Human CCDS set: CCDS14552

Version

ENST00000465301.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000057906 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.