Transcript: ENST00000289272.2 PCDHA13-003

Description

protocadherin alpha 13 [Source:HGNC Symbol;Acc:8667]

Gene Synonyms

CNR5, CNR7, CNRN5, CNRN7, CNRS5, CNRS7, CRNR5, CRNR7, PCDH-ALPHA11, PCDH-ALPHA13

Location

About this transcript

This transcript has 4 exons, is annotated with 50 domains and features, is associated with 53760 variant alleles and maps to 658 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000289272.2	PCDHA13-003	5260	950aa	ENSP00000289272.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4240	Q9Y5I0	NM_031865.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409494.1	PCDHA13-002	4884	904aa	ENSP00000386821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JA99 Q59H35	NM_031865.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 5,260 bps, Translation length: 950 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5I0

CCDS

This transcript is a member of the Human CCDS set: CCDS4240

Version

ENST00000289272.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000335000 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.