Transcript: ENST00000486982.1 COL11A2-004

Description

collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]

Gene Synonyms

DFNA13, DFNB53, FBCG2, HKE5, PARP, STL3

Location

Chromosome HSCHR6_MHC_SSTO: 33,269,781-33,284,978 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 6905 variant alleles and maps to 1121 oligo probes.

Gene

This transcript is a product of gene ENSG00000232541.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000548637.1	COL11A2-241	6035	1683aa	ENSP00000447422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6LCP7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443138.1	COL11A2-001	5868	1623aa	ENSP00000404513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6LCP7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000548137.1	COL11A2-240	5792	1602aa	ENSP00000448090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6LCP7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447855.1	COL11A2-002	1790	597aa	ENSP00000415296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000434780.1	COL11A2-003	898	263aa	ENSP00000408523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486982.1	COL11A2-004	1984	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,984 bps,

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000486982.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000276199 (version 2)

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Transcript: ENST00000486982.1 COL11A2-004

Summary