Transcript: ENST00000520164.1 EBF2-001

Description

early B-cell factor 2 [Source:HGNC Symbol;Acc:19090]

Gene Synonyms

COE2, EBF-2, FLJ11500, O/E-3, OE-3

Location

About this transcript

This transcript has 16 exons, is annotated with 9 domains and features, is associated with 94036 variant alleles and maps to 676 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000520164.1	EBF2-001	5145	575aa	ENSP00000430241.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43726	B2RNT0 B7Z934 Q9HAK2	NM_022659.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000408929.3	EBF2-002	1888	427aa	ENSP00000386178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z934	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535548.1	EBF2-201	1017	264aa	ENSP00000437909.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H645	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517825.1	EBF2-003	2505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 5,145 bps, Translation length: 575 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HAK2

CCDS

This transcript is a member of the Human CCDS set: CCDS43726

Version

ENST00000520164.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000375886 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.