Transcript: ENST00000555086.1 GALT-015

Description

galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:4135]

Location

Chromosome 9: 34,646,779-34,649,127 forward strand.

About this transcript

This transcript has 8 exons, is associated with 1686 variant alleles and maps to 491 oligo probes.

Gene

This transcript is a product of gene ENSG00000213930.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378842.3	GALT-002	1768	379aa	ENSP00000368119.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6565	D0EM86 D1MBF6 D3DRM8 G3V3U5 P07902 P78433	NM_000155.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450095.2	GALT-201	1164	270aa	ENSP00000401956.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59122	D0EM86 P07902 P78433	NM_001258332.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554550.1	GALT-014	1164	84aa	ENSP00000451435.1	Nonsense mediated decay		G3V3U5	-	-
ENST00000554085.1	GALT-016	890	90aa	ENSP00000450419.1	Nonsense mediated decay		G3V223 G3V3U5	-	-
ENST00000473506.2	GALT-017	838	120aa	ENSP00000432839.2	Nonsense mediated decay		F2Z2X9 G3V3U5	-	-
ENST00000556244.1	GALT-023	807	59aa	ENSP00000451756.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554897.1	GALT-018	578	84aa	ENSP00000450942.1	Nonsense mediated decay		G3V3U5	-	-
ENST00000488412.2	GALT-008	858	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557541.1	GALT-003	595	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555020.1	GALT-011	2566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489643.2	GALT-010	2019	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557706.1	GALT-012	1828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554638.1	GALT-007	1712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487381.1	GALT-005	1442	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485531.1	GALT-004	1201	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555086.1	GALT-015	1060	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472111.1	GALT-009	973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554944.1	GALT-013	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473529.1	GALT-006	913	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465543.2	GALT-028	903	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556494.1	GALT-021	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554139.1	GALT-019	858	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555754.1	GALT-027	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555214.1	GALT-020	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000605275.1	GALT-001	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556403.1	GALT-025	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554330.1	GALT-026	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556157.1	GALT-022	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468099.2	GALT-024	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,060 bps,

Version

ENST00000555086.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410616 (version 1)

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Transcript: ENST00000555086.1 GALT-015

Summary