Transcript: ENST00000394633.3 PCDHA1-202

Description

protocadherin alpha 1 [Source:HGNC Symbol;Acc:8663]

Gene Synonyms

PCDH-ALPHA1

Location

About this transcript

This transcript has 4 exons, is annotated with 41 domains and features, is associated with 118967 variant alleles and maps to 504 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000504120.2	PCDHA1-002	5260	950aa	ENSP00000420840.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54913	Q9Y5I3	NM_018900.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394633.3	PCDHA1-202	4468	686aa	ENSP00000378129.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54912	Q9Y5I3	NM_031411.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378133.3	PCDHA1-201	2571	807aa	ENSP00000367373.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y5I3	NM_031410.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,468 bps, Translation length: 686 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5I3

CCDS

This transcript is a member of the Human CCDS set: CCDS54912

Version

ENST00000394633.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript having same CDS:	OTTHUMT00000389127 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.