Transcript: ENST00000441888.3 POU5F1-004

Description

POU class 5 homeobox 1 [Source:HGNC Symbol;Acc:9221]

Gene Synonyms

MGC22487, OCT3, OCT4, OTF-3, OTF3, OTF4, Oct-3, Oct-4, Oct4

Location

Chromosome 6: 31,132,119-31,148,508 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 6596 variant alleles and maps to 1223 oligo probes.

Gene

This transcript is a product of gene ENSG00000204531.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000259915.8	POU5F1-001	1414	360aa	ENSP00000259915.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34391	B5B8N7 B5B8N8 B5B8N9 B5B8P0 B5B8P1 B5B8P2 B5B8P3 B5B8P4 B5B8P6 B5B8P7 B5B8P8 B5B8P9 B5B8Q0 B5B8Q1 B5B8Q2 B5B8Q4 D2IYK3 F2Z381 Q01860 U3KQH6	NM_002701.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513407.1	POU5F1-005	2276	164aa	ENSP00000475512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z381	NM_001285986.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471529.2	POU5F1-002	1718	164aa	ENSP00000425083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z381	NM_203289.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512818.1	POU5F1-006	1233	164aa	ENSP00000425479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z381	NM_001173531.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000606567.1	POU5F1-007	1233	190aa	ENSP00000475880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47398	F2Z381 U3KQH6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441888.3	POU5F1-004	1050	164aa	ENSP00000389359.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z381	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461401.1	POU5F1-003	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 1,050 bps, Translation length: 164 residues

Version

ENST00000441888.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000401434 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000441888.3 POU5F1-004

Summary