Transcript: ENST00000473655.1 NFKBIL1-005

Description

nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 [Source:HGNC Symbol;Acc:7800]

Gene Synonyms

IKBL, LST1, NFKBIL

Location

About this transcript

This transcript has 3 exons, is associated with 4215 variant alleles and maps to 1299 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376148.4	NFKBIL1-001	1478	381aa	ENSP00000365318.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4700	Q5STV6 Q9UBC1	NM_005007.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376146.4	NFKBIL1-003	1411	358aa	ENSP00000365316.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47400	Q5STV6	-	-
ENST00000376145.4	NFKBIL1-002	1401	366aa	ENSP00000365315.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47399	-	NM_001144961.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496233.1	NFKBIL1-004	554	125aa	ENSP00000437148.1	Nonsense mediated decay		F2Z390	-	-
ENST00000473655.1	NFKBIL1-005	700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 700 bps,

Version

ENST00000473655.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000259082 (version 1)