Transcript: ENST00000367474.1 SAMD5-001

Description

sterile alpha motif domain containing 5 [Source:HGNC Symbol;Acc:21180]

Gene Synonyms

SAMDC1, dJ875H10.1

Location

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 24995 variant alleles and maps to 378 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367474.1	SAMD5-001	6089	173aa	ENSP00000356444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34548	Q5TGI4	NM_001030060.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566741.1	SAMD5-002	393	97aa	ENSP00000456528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BS43	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 6,089 bps, Translation length: 173 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5TGI4

CCDS

This transcript is a member of the Human CCDS set: CCDS34548

Version

ENST00000367474.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000042610 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.