Transcript: ENST00000411948.2 COX20-001

Description

COX20 cytochrome C oxidase assembly factor [Source:HGNC Symbol;Acc:26970]

Gene Synonyms

FAM36A, FLJ43269

Location

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 5236 variant alleles and maps to 425 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000411948.2	COX20-001	2631	118aa	ENSP00000406327.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31080	B3KM21 Q5RI15	NM_198076.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366528.3	COX20-005	568	130aa	ENSP00000355486.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5RI15	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498262.1	COX20-002	2290	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000391839.2	COX20-003	1005	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000464757.1	COX20-004	2616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,631 bps, Translation length: 118 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RI15

CCDS

This transcript is a member of the Human CCDS set: CCDS31080

Version

ENST00000411948.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000097174 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.