Transcript: ENST00000486018.1 TPM2-004

Description

tropomyosin 2 (beta) [Source:HGNC Symbol;Acc:12011]

Gene Synonyms

AMCD1, DA1, DA2B, HEL-S-273, NEM4, TMSB

Location

Chromosome 9: 35,684,748-35,685,540 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 552 variant alleles and maps to 315 oligo probes.

Gene

This transcript is a product of gene ENSG00000198467.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378292.3	TPM2-001	2147	284aa	ENSP00000367542.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6586	P07951	NM_213674.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378300.5	TPM2-005	1771	322aa	ENSP00000367550.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCU8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360958.2	TPM2-002	1189	284aa	ENSP00000354219.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6587	P07951	NM_003289.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000329305.2	TPM2-006	1018	284aa	ENSP00000367541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000607559.1	TPM2-008	518	111aa	ENSP00000475952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQK2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471212.1	TPM2-003	1363	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486018.1	TPM2-004	699	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000604975.1	TPM2-007	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 699 bps,

Version

ENST00000486018.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000052378 (version 1)

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Transcript: ENST00000486018.1 TPM2-004

Summary