Transcript: ENST00000486791.1 CSF2RA-003

Description

colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) [Source:HGNC Symbol;Acc:2435]

Gene Synonyms

CD116, CDw116, CSF2R, CSF2RAX, CSF2RAY, CSF2RX, CSF2RY, GM-CSF-R-alpha, GMCSFR, GMR, SMDP4

Location

Chromosome X: 1,387,738-1,428,827 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 9 domains and features, is associated with 28188 variant alleles and maps to 900 oligo probes.

Gene

This transcript is a product of gene ENSG00000198223.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000417535.2	CSF2RA-202	1787	434aa	ENSP00000394227.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55359	J3JS73 J3JS74 P15509	NM_001161530.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381524.3	CSF2RA-001	2291	400aa	ENSP00000370935.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35191	J3JS73 J3JS74 P15509	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432318.2	CSF2RA-203	1981	400aa	ENSP00000416437.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35191	J3JS73 J3JS74 P15509	NM_001161529.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381529.3	CSF2RA-006	1816	400aa	ENSP00000370940.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35191	J3JS73 J3JS74 P15509	NM_172245.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361536.3	CSF2RA-201	1756	333aa	ENSP00000354836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35192	J3JS73 J3JS74 P15509	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355432.3	CSF2RA-004	1628	377aa	ENSP00000347606.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35190	J3JS73 J3JS74 P15509	NM_172246.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000501036.2	CSF2RA-204	1622	267aa	ENSP00000440491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55361	P15509	NM_001161532.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381509.3	CSF2RA-005	1601	410aa	ENSP00000370920.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55360	J3JS73 J3JS74 P15509	NM_001161531.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355805.2	CSF2RA-002	1410	233aa	ENSP00000348058.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35193	J3JS73 P15509	NM_172249.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381500.1	CSF2RA-007	1283	333aa	ENSP00000370911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35192	J3JS73 J3JS74 P15509	NM_172247.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419094.1	CSF2RA-010	856	188aa	ENSP00000397452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3JS73	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412290.1	CSF2RA-009	802	238aa	ENSP00000410667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3JS73 J3JS74	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494969.2	CSF2RA-012	489	90aa	ENSP00000476684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486791.1	CSF2RA-003	1671	285aa	ENSP00000436825.1	Nonsense mediated decay		F2Z3C9 J3JS73 J3JS74	-	-
ENST00000498153.1	CSF2RA-017	1114	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493312.1	CSF2RA-008	900	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475259.1	CSF2RA-016	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481245.1	CSF2RA-011	459	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478256.1	CSF2RA-014	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477940.1	CSF2RA-013	391	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491683.1	CSF2RA-015	389	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 1,671 bps, Translation length: 285 residues

Version

ENST00000486791.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000035015 (version 3)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000486791.1 CSF2RA-003

Summary