Transcript: ENST00000372466.4 NUP62CL-001

Description

nucleoporin 62kDa C-terminal like [Source:HGNC Symbol;Acc:25960]

Gene Synonyms

FLJ20130, NUP62L

Location

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 24331 variant alleles and maps to 467 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372466.4	NUP62CL-001	1755	184aa	ENSP00000361544.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14527	Q5JSN5 Q9H1M0	NM_017681.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372461.3	NUP62CL-201	1608	72aa	ENSP00000361539.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9H1M0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432145.1	NUP62CL-004	688	198aa	ENSP00000408612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000421752.1	NUP62CL-003	618	136aa	ENSP00000405906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSN5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484614.1	NUP62CL-002	1515	72aa	ENSP00000433269.1	Nonsense mediated decay		Q9H1M0	-	-

Summary

Statistics

Exons: 9, Coding exons: 6, Transcript length: 1,755 bps, Translation length: 184 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H1M0

CCDS

This transcript is a member of the Human CCDS set: CCDS14527

Version

ENST00000372466.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000057828 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.