Transcript: ENST00000540654.1 SLC22A6-007

Description

solute carrier family 22 (organic anion transporter), member 6 [Source:HGNC Symbol;Acc:10970]

Gene Synonyms

HOAT1, OAT1, PAHT, ROAT1

Location

Chromosome 11: 62,703,857-62,752,296 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 4 domains and features, is associated with 21778 variant alleles and maps to 442 oligo probes.

Gene

This transcript is a product of gene ENSG00000197901.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377871.3	SLC22A6-002	2151	563aa	ENSP00000367102.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31591	Q4U2R8	NM_153278.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360421.4	SLC22A6-001	2143	550aa	ENSP00000353597.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8041	Q4U2R8	NM_153277.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421062.2	SLC22A6-004	1560	519aa	ENSP00000404441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44631	Q4U2R8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458333.2	SLC22A6-003	1521	506aa	ENSP00000396401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44632	Q4U2R8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540654.1	SLC22A6-007	1778	261aa	ENSP00000445946.1	Nonsense mediated decay		F5H0T7	-	-
ENST00000537349.1	SLC22A6-008	768	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 5, Transcript length: 1,778 bps, Translation length: 261 residues

Version

ENST00000540654.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000396182 (version 1)

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Transcript: ENST00000540654.1 SLC22A6-007

Summary