Transcript: ENST00000359175.4 SPTSSB-001

Description

serine palmitoyltransferase, small subunit B [Source:HGNC Symbol;Acc:24045]

Gene Synonyms

ADMP, C3orf57, SSSPTB, ssSPTb

Location

About this transcript

This transcript has 3 exons, is annotated with 2 domains and features, is associated with 11709 variant alleles and maps to 286 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359175.4	SPTSSB-001	3103	76aa	ENSP00000352097.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33887	Q8NFR3	NM_001040100.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497137.1	SPTSSB-003	880	76aa	ENSP00000420115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33887	Q8NFR3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000497374.1	SPTSSB-002	679	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 3,103 bps, Translation length: 76 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NFR3

CCDS

This transcript is a member of the Human CCDS set: CCDS33887

Version

ENST00000359175.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000353181 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.