Transcript: ENST00000355540.3 TRRAP-002

Description

transformation/transcription domain-associated protein [Source:HGNC Symbol;Acc:12347]

Gene Synonyms

PAF350/400, PAF400, STAF40, TR-AP, Tra1

Location

Chromosome 7: 98,476,113-98,610,866 forward strand.

About this transcript

This transcript has 71 exons, is annotated with 43 domains and features, is associated with 62791 variant alleles and maps to 1549 oligo probes.

Gene

This transcript is a product of gene ENSG00000196367.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359863.4	TRRAP-001	12677	3859aa	ENSP00000352925.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59066	C9K0N1 Q9Y4A5	NM_001244580.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355540.3	TRRAP-002	12590	3830aa	ENSP00000347733.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5659	C9K0N1 Q9Y4A5	NM_003496.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446306.3	TRRAP-004	12492	3848aa	ENSP00000403708.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0N1 F2Z2U4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456197.1	TRRAP-003	11654	3588aa	ENSP00000394645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000417523.1	TRRAP-005	550	71aa	ENSP00000401107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0N1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000480695.1	TRRAP-006	805	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 71, Coding exons: 70, Transcript length: 12,590 bps, Translation length: 3,830 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y4A5

CCDS

This transcript is a member of the Human CCDS set: CCDS5659

Version

ENST00000355540.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000317979 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000355540.3 TRRAP-002

Summary