Transcript: ENST00000456354.2 CATSPER4-001

Description

cation channel, sperm associated 4 [Source:HGNC Symbol;Acc:23220]

Location

About this transcript

This transcript has 10 exons, is annotated with 17 domains and features, is associated with 5964 variant alleles and maps to 332 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000456354.2	CATSPER4-001	1912	472aa	ENSP00000390423.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30645	Q7RTX7	NM_198137.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338855.2	CATSPER4-002	1516	483aa	ENSP00000341006.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNU1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518899.1	CATSPER4-003	1831	384aa	ENSP00000429464.1	Nonsense mediated decay		Q7RTX7	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,912 bps, Translation length: 472 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7RTX7

CCDS

This transcript is a member of the Human CCDS set: CCDS30645

Version

ENST00000456354.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000019849 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.