Transcript: ENST00000345080.4 LIN28B-001

Description

lin-28 homolog B (C. elegans) [Source:HGNC Symbol;Acc:32207]

Gene Synonyms

CSDD2, FLJ16517

Location

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 53584 variant alleles and maps to 335 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000345080.4	LIN28B-001	5505	250aa	ENSP00000344401.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34504	A7E2T3 Q6ZN17	NM_001004317.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 5,505 bps, Translation length: 250 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6ZN17

CCDS

This transcript is a member of the Human CCDS set: CCDS34504

Version

ENST00000345080.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041646 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.