Transcript: ENST00000480686.1 RNF220-004

Description

ring finger protein 220 [Source:HGNC Symbol;Acc:25552]

Gene Synonyms

C1orf164, FLJ10597

Location

Chromosome 1: 45,108,804-45,117,395 forward strand.

About this transcript

This transcript has 6 exons, is associated with 3753 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000187147.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355387.2	RNF220-001	3099	566aa	ENSP00000347548.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS510	D3DPZ1 Q5VTB9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361799.2	RNF220-002	3009	566aa	ENSP00000354872.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS510	D3DPZ1 Q5VTB9	NM_018150.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372247.2	RNF220-201	2650	566aa	ENSP00000361321.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS510	D3DPZ1 Q5VTB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443020.2	RNF220-202	1544	353aa	ENSP00000414640.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DLZ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000335497.7	RNF220-014	1203	260aa	ENSP00000335580.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TDE8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440132.2	RNF220-013	1200	259aa	ENSP00000388533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TDE7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000453863.1	RNF220-010	361	121aa	ENSP00000411541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000488865.2	RNF220-016	860	45aa	ENSP00000475383.1	Nonsense mediated decay		U3KPZ6	-	-
ENST00000480686.1	RNF220-004	3835	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474956.1	RNF220-005	3303	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474064.1	RNF220-003	2734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484745.1	RNF220-006	1951	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475378.1	RNF220-015	916	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496262.1	RNF220-008	840	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474394.1	RNF220-017	810	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471494.1	RNF220-012	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470498.1	RNF220-009	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000497469.1	RNF220-011	590	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487332.1	RNF220-007	452	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 3,835 bps,

Version

ENST00000480686.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000021574 (version 1)

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Transcript: ENST00000480686.1 RNF220-004

Summary