Transcript: ENST00000491418.1 SPATA21-004

Description

spermatogenesis associated 21 [Source:HGNC Symbol;Acc:28026]

Gene Synonyms

spergen-2, spergen2

Location

Chromosome 1: 16,713,612-16,730,469 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 7564 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000187144.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335496.1	SPATA21-001	2015	469aa	ENSP00000335612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS172	Q7Z572	NM_198546.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540400.1	SPATA21-201	1773	446aa	ENSP00000440046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375577.1	SPATA21-002	1136	200aa	ENSP00000364727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VXG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491418.1	SPATA21-004	661	160aa	ENSP00000420753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5T0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466212.1	SPATA21-003	3619	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 661 bps, Translation length: 160 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000491418.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355657 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000491418.1 SPATA21-004

Summary