Transcript: ENST00000409381.1 LYPD6-003

Description

LY6/PLAUR domain containing 6 [Source:HGNC Symbol;Acc:28751]

Gene Synonyms

MGC52057

Location

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 59451 variant alleles and maps to 413 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334166.4	LYPD6-001	4071	171aa	ENSP00000334463.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2188	C9IYE7 Q86Y78	NM_194317.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409381.1	LYPD6-003	3578	171aa	ENSP00000386413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2188	C9IYE7 Q86Y78	NM_001195685.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414420.1	LYPD6-005	565	53aa	ENSP00000392286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYE7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392854.4	LYPD6-004	1580	76aa	ENSP00000376594.4	Nonsense mediated decay		C9IYE7 Q86Y78	-	-
ENST00000418762.1	LYPD6-002	1204	76aa	ENSP00000396855.1	Nonsense mediated decay		C9IYE7 Q86Y78	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 3,578 bps, Translation length: 171 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86Y78

CCDS

This transcript is a member of the Human CCDS set: CCDS2188

Version

ENST00000409381.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000332304 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.