Transcript: ENST00000392854.4 LYPD6-004

Description

LY6/PLAUR domain containing 6 [Source:HGNC Symbol;Acc:28751]

Gene Synonyms

MGC52057

Location

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 42449 variant alleles and maps to 351 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334166.4	LYPD6-001	4071	171aa	ENSP00000334463.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2188	C9IYE7 Q86Y78	NM_194317.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409381.1	LYPD6-003	3578	171aa	ENSP00000386413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2188	C9IYE7 Q86Y78	NM_001195685.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414420.1	LYPD6-005	565	53aa	ENSP00000392286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYE7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392854.4	LYPD6-004	1580	76aa	ENSP00000376594.4	Nonsense mediated decay		C9IYE7 Q86Y78	-	-
ENST00000418762.1	LYPD6-002	1204	76aa	ENSP00000396855.1	Nonsense mediated decay		C9IYE7 Q86Y78	-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 1,580 bps, Translation length: 76 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86Y78

Version

ENST00000392854.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000332305 (version 2)