Transcript: ENST00000396231.2 EFCAB6-001

Description

EF-hand calcium binding domain 6 [Source:HGNC Symbol;Acc:24204]

Gene Synonyms

DJBP, FLJ23588, HSCBCIP1, KIAA1672, dJ185D5.1

Location

Chromosome 22: 43,924,624-44,208,070 reverse strand.

About this transcript

This transcript has 30 exons, is annotated with 63 domains and features, is associated with 122988 variant alleles and maps to 965 oligo probes.

Gene

This transcript is a product of gene ENSG00000186976.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262726.7	EFCAB6-010	4869	1501aa	ENSP00000262726.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14049	Q5THR3	NM_022785.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396231.2	EFCAB6-001	4424	1349aa	ENSP00000379533.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14050	Q5THR3	NM_198856.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356087.4	EFCAB6-003	1129	200aa	ENSP00000348391.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0QYI5 Q9NQ18	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358439.4	EFCAB6-201	1069	243aa	ENSP00000351219.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DKR4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461800.1	EFCAB6-005	1252	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483324.1	EFCAB6-008	483	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485142.1	EFCAB6-006	467	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476600.1	EFCAB6-007	419	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477145.1	EFCAB6-009	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468552.1	EFCAB6-004	5120	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000404038.1	EFCAB6-002	1648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 27, Transcript length: 4,424 bps, Translation length: 1,349 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5THR3

CCDS

This transcript is a member of the Human CCDS set: CCDS14050

Version

ENST00000396231.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000318738 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000396231.2 EFCAB6-001

Summary