Transcript: ENST00000433616.1 PDZD7-005

Description

PDZ domain containing 7 [Source:HGNC Symbol;Acc:26257]

Gene Synonyms

FLJ23209, PDZK7, bA108L7.8

Location

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 3942 variant alleles and maps to 217 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370215.3	PDZD7-003	2032	517aa	ENSP00000359234.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31269	Q9H5P4 S4R3X4	NM_024895.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470414.1	PDZD7-001	1057	181aa	ENSP00000474831.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3X4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433616.1	PDZD7-005	624	208aa	ENSP00000412533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000474125.2	PDZD7-004	4433	133aa	ENSP00000474447.1	Nonsense mediated decay		S4R3J9	-	-
ENST00000476306.1	PDZD7-002	1591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 624 bps, Translation length: 208 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000433616.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000049885 (version 1)