Transcript: ENST00000557358.1 VPS33B-006

Description

vacuolar protein sorting 33 homolog B (yeast) [Source:HGNC Symbol;Acc:12712]

Gene Synonyms

FLJ14848

Location

Chromosome 15: 91,557,034-91,565,826 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 4330 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSG00000184056.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333371.3	VPS33B-001	2767	617aa	ENSP00000327650.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10369	B3KQF6 Q9H267	NM_018668.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535906.1	VPS33B-003	2420	590aa	ENSP00000444053.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KQF6 F5H008	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535843.1	VPS33B-201	2356	526aa	ENSP00000446267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KQF6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574755.1	VPS33B-004	2356	80aa	ENSP00000460413.1	Nonsense mediated decay		G3V3F9	-	-
ENST00000557358.1	VPS33B-006	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556096.2	VPS33B-002	1731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554660.1	VPS33B-005	1055	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557470.1	VPS33B-007	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554264.1	VPS33B-008	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 561 bps,

Version

ENST00000557358.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414778 (version 1)

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Transcript: ENST00000557358.1 VPS33B-006

Summary