Transcript: ENST00000534796.1 PTP4A2-008

Description

protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635]

Gene Synonyms

HH13, HH7-2, HU-PP-1, OV-1, PRL-2, PRL2, PTP4A, PTPCAAX2, ptp-IV1a, ptp-IV1b

Location

Chromosome 1: 32,384,601-32,403,386 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 8808 variant alleles and maps to 186 oligo probes.

Gene

This transcript is a product of gene ENSG00000184007.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344035.6	PTP4A2-201	3929	167aa	ENSP00000344909.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS348	E9PL34 E9PMY3 Q12974	NM_080391.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602725.1	PTP4A2-019	3353	167aa	ENSP00000473259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS348	E9PL34 E9PMY3 Q12974	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356536.3	PTP4A2-202	1952	82aa	ENSP00000348932.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL34 E9PMY3 Q12974	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457805.2	PTP4A2-020	1032	136aa	ENSP00000409260.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53292	E9PL34 Q12974	NM_001195101.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534796.1	PTP4A2-008	900	22aa	ENSP00000433375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL34	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000468531.1	PTP4A2-007	830	63aa	ENSP00000437251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL34 E9PMY3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602683.1	PTP4A2-021	667	142aa	ENSP00000473490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59193	E9PL34 E9PMY3 R4GN50	-	-
ENST00000470404.1	PTP4A2-006	575	73aa	ENSP00000435941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PL34 E9PMY3 E9PRR9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532001.2	PTP4A2-016	911	66aa	ENSP00000433050.1	Nonsense mediated decay		E9PL34 E9PML8 E9PMY3	-	-
ENST00000528253.1	PTP4A2-015	806	69aa	ENSP00000433800.1	Nonsense mediated decay		E9PJC0 E9PL34 E9PMY3	-	-
ENST00000526960.1	PTP4A2-014	793	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494444.2	PTP4A2-003	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524384.1	PTP4A2-013	663	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532289.1	PTP4A2-011	610	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529477.1	PTP4A2-009	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528840.1	PTP4A2-012	456	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533408.1	PTP4A2-010	376	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475464.1	PTP4A2-004	366	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489313.1	PTP4A2-002	1551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484483.1	PTP4A2-005	651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 900 bps, Translation length: 22 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000534796.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000393006 (version 1)

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Transcript: ENST00000534796.1 PTP4A2-008

Summary