Transcript: ENST00000424406.2 NKX2-5-003

Description

NK2 homeobox 5 [Source:HGNC Symbol;Acc:2488]

Gene Synonyms

CHNG5, CSX, CSX1, HLHS2, NKX2.5, NKX2E, NKX4-1, VSD3

Location

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 1818 variant alleles and maps to 316 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000329198.4	NKX2-5-001	1709	324aa	ENSP00000327758.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4387	A1ECB8 P52952	NM_004387.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424406.2	NKX2-5-003	1124	112aa	ENSP00000395378.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54950	P52952	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521848.1	NKX2-5-004	1027	151aa	ENSP00000427906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54949	P52952	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517440.1	NKX2-5-002	655	142aa	ENSP00000429905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RH49	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,124 bps, Translation length: 112 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52952

CCDS

This transcript is a member of the Human CCDS set: CCDS54950

Version

ENST00000424406.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000317804 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.