Description
SATB homeobox 1 [Source:HGNC Symbol;Acc:10541]
Location
Chromosome 3: 18,386,879-18,466,829 reverse strand.
About this transcript
This transcript has 11 exons, is annotated with 17 domains and features, is associated with 34416 variant alleles and maps to 819 oligo probes.
Gene
This transcript is a product of gene ENSG00000182568.12 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000417717.2 | SATB1-004 | 4589 | 795aa | ENSP00000399518.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56242 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_001195470.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000338745.6 | SATB1-001 | 7810 | 763aa | ENSP00000341024.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2631 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_002971.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000454909.2 | SATB1-002 | 2968 | 763aa | ENSP00000399708.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2631 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_001131010.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000440737.1 | SATB1-008 | 975 | 224aa | ENSP00000402982.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000452260.2 | SATB1-015 | 939 | 172aa | ENSP00000406727.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZC5 C9J3I0 C9J7F3 C9JGL9 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000493952.2 | SATB1-009 | 626 | 82aa | ENSP00000453908.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YN86 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000415069.1 | SATB1-006 | 594 | 166aa | ENSP00000390529.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JGL9 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414509.1 | SATB1-011 | 583 | 116aa | ENSP00000408871.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444341.1 | SATB1-012 | 579 | 70aa | ENSP00000391344.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000457005.1 | SATB1-014 | 564 | 129aa | ENSP00000398072.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000450898.1 | SATB1-013 | 464 | 8aa | ENSP00000394520.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000475083.1 | SATB1-016 | 558 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000606296.1 | SATB1-022 | 4200 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000491519.3 | SATB1-017 | 996 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000467628.1 | SATB1-020 | 551 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000487699.1 | SATB1-010 | 477 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482788.1 | SATB1-018 | 406 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000476178.1 | SATB1-021 | 361 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |