Transcript: ENST00000335272.5 PITPNB-001

Description

phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002]

Gene Synonyms

PI-TP-beta, PtdInsTP, VIB1B

Location

Chromosome 22: 28,247,657-28,315,256 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 10 domains and features, is associated with 28172 variant alleles and maps to 555 oligo probes.

Gene

This transcript is a product of gene ENSG00000180957.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335272.5	PITPNB-001	2926	271aa	ENSP00000334738.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13842	B3KYB6 P48739	NM_012399.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455418.3	PITPNB-201	2852	273aa	ENSP00000405179.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63432	B3KYB6 B3KYB7 B7Z7Q0	NM_001284278.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320996.10	PITPNB-002	2826	272aa	ENSP00000321266.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS63433	B3KYB6 P48739	NM_001284277.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415296.1	PITPNB-003	884	120aa	ENSP00000406542.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KYB6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000436663.1	PITPNB-006	590	167aa	ENSP00000403675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KYB7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477861.1	PITPNB-007	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471825.1	PITPNB-004	766	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465179.1	PITPNB-008	629	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460566.1	PITPNB-005	592	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493007.1	PITPNB-009	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,926 bps, Translation length: 271 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48739

CCDS

This transcript is a member of the Human CCDS set: CCDS13842

Version

ENST00000335272.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000320740 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000335272.5 PITPNB-001

Summary