Transcript: ENST00000546590.2 TMTC2-005

Description

transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:25440]

Gene Synonyms

DKFZp762A217, IBDBP1

Location

About this transcript

This transcript has 11 exons, is associated with 195268 variant alleles and maps to 454 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000321196.3	TMTC2-002	5681	836aa	ENSP00000322300.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9025	Q8N394	NM_152588.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549919.1	TMTC2-003	6211	830aa	ENSP00000447609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000548305.1	TMTC2-004	2678	637aa	ENSP00000448292.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VSH2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546590.2	TMTC2-005	4527	35aa	ENSP00000448630.2	Nonsense mediated decay		F8VRQ2	-	-
ENST00000551915.1	TMTC2-001	3304	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 2, Transcript length: 4,527 bps, Translation length: 35 residues

Version

ENST00000546590.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000405666 (version 2)