Transcript: ENST00000319017.4 SLC25A20-001

Description

solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 [Source:HGNC Symbol;Acc:1421]

Gene Synonyms

CAC, CACT

Location

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 17935 variant alleles and maps to 435 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319017.4	SLC25A20-001	1879	301aa	ENSP00000326305.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2779	B4DWZ5 O43772	NM_000387.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430379.1	SLC25A20-002	1571	228aa	ENSP00000388986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPE1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544097.1	SLC25A20-201	1383	251aa	ENSP00000438731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DWZ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440964.1	SLC25A20-003	1383	76aa	ENSP00000388563.1	Nonsense mediated decay		F8WEF6	-	-
ENST00000479050.1	SLC25A20-004	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,879 bps, Translation length: 301 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43772

CCDS

This transcript is a member of the Human CCDS set: CCDS2779

Version

ENST00000319017.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257516 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.