Transcript: ENST00000321535.4 FBXO39-001

Description

F-box protein 39 [Source:HGNC Symbol;Acc:28565]

Gene Synonyms

FBX39, Fbx39, MGC35179

Location

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features, is associated with 5321 variant alleles and maps to 268 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000321535.4	FBXO39-001	1677	442aa	ENSP00000321386.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11082	Q8N4B4	NM_153230.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575022.1	FBXO39-003	1268	36aa	ENSP00000458890.1	Nonsense mediated decay		I3L1J5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572251.1	FBXO39-002	917	50aa	ENSP00000459284.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,677 bps, Translation length: 442 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N4B4

CCDS

This transcript is a member of the Human CCDS set: CCDS11082

Version

ENST00000321535.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219866 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.