Transcript: ENST00000560154.1 IRX5-003

Description

iroquois homeobox 5 [Source:HGNC Symbol;Acc:14361]

Gene Synonyms

HMMS, IRX-2a, IRX2A, IRXB2

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 1910 variant alleles and maps to 267 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000394636.4	IRX5-001	2401	483aa	ENSP00000378132.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10751	P78411	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320990.5	IRX5-002	2061	482aa	ENSP00000316250.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58462	P78411	NM_005853.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558597.1	IRX5-004	1825	417aa	ENSP00000453725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P78411	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560154.1	IRX5-003	879	263aa	ENSP00000453660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YML8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 879 bps, Translation length: 263 residues

Version

ENST00000560154.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417440 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.